Package org.biojava.bio.seq.db
Class GenpeptSequenceDB
- java.lang.Object
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- org.biojava.bio.seq.db.GenpeptSequenceDB
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public class GenpeptSequenceDB extends java.lang.Object
- Author:
- Lei Lai, Matthew Pocock, Shuvankar Mukherjee
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Constructor Summary
Constructors Constructor Description GenpeptSequenceDB()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description boolean
checkException()
boolean
checkIOException()
protected java.net.URL
getAddress(java.lang.String id)
protected java.net.URL
getAddress(java.lang.String id, java.lang.String format)
protected Alphabet
getAlphabet()
java.lang.String
getName()
Sequence
getSequence(java.lang.String id)
protected SequenceFormat
getSequenceFormat()
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Method Detail
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getSequenceFormat
protected SequenceFormat getSequenceFormat()
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getAlphabet
protected Alphabet getAlphabet()
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getAddress
protected java.net.URL getAddress(java.lang.String id) throws java.net.MalformedURLException
- Throws:
java.net.MalformedURLException
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getAddress
protected java.net.URL getAddress(java.lang.String id, java.lang.String format) throws java.net.MalformedURLException
- Throws:
java.net.MalformedURLException
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getName
public java.lang.String getName()
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getSequence
public Sequence getSequence(java.lang.String id) throws BioException
- Throws:
BioException
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checkIOException
public boolean checkIOException()
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checkException
public boolean checkException()
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