Class DASStructureCall
- java.lang.Object
-
- org.biojava.bio.program.das.dasstructure.DASStructureCall
-
public class DASStructureCall extends java.lang.Object
Calls a DAS - Structure server.- Since:
- 1.4
- Version:
- %I% %G%
- Author:
- Andreas Prlic
-
-
Constructor Summary
Constructors Constructor Description DASStructureCall()
Constructs a DASStructureCall object.DASStructureCall(java.lang.String url)
Constructs a DASStructureCall object.
-
Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description java.lang.String
getServerurl()
get url of structure service.Structure
getStructure(java.lang.String pdb_code)
connect to a DAS structure service and retreive 3D data.protected java.lang.String
getTimeStamp()
Returns a time stamp .void
setServerurl(java.lang.String s)
set url of structure service.
-
-
-
Method Detail
-
getTimeStamp
protected java.lang.String getTimeStamp()
Returns a time stamp .- Returns:
- a String representing the current system time
-
setServerurl
public void setServerurl(java.lang.String s)
set url of structure service.- Parameters:
s
- a String specifying the serverurl value- See Also:
getServerurl()
-
getServerurl
public java.lang.String getServerurl()
get url of structure service.- Returns:
- a Structure object
- Throws:
java.io.IOException
- ...- See Also:
setServerurl(java.lang.String)
-
getStructure
public Structure getStructure(java.lang.String pdb_code) throws java.io.IOException
connect to a DAS structure service and retreive 3D data. return a biojava Structure object- Parameters:
pdb_code
- a String- Returns:
- a Structure object
- Throws:
java.io.IOException
- ...
-
-