Class SimpleGappedSymbolList.Block

  • All Implemented Interfaces:
    java.io.Serializable
    Enclosing class:
    SimpleGappedSymbolList

    protected static final class SimpleGappedSymbolList.Block
    extends java.lang.Object
    implements java.io.Serializable
    An aligned block.

    The alignment is actualy stoored as a list of these objects. Each block is contiguous with the next in the source fields, but may be gapped in the view fields.

    Author:
    Matthew Pocock
    See Also:
    Serialized Form
    • Field Detail

      • sourceStart

        public int sourceStart
      • sourceEnd

        public int sourceEnd
      • viewStart

        public int viewStart
      • viewEnd

        public int viewEnd
    • Constructor Detail

      • Block

        public Block​(int sourceStart,
                     int sourceEnd,
                     int viewStart,
                     int viewEnd)
    • Method Detail

      • toString

        public java.lang.String toString()
        Overrides:
        toString in class java.lang.Object
      • isSane

        public boolean isSane()