Uses of Class
org.biojava.bio.structure.io.mmcif.model.ChemComp
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Packages that use ChemComp Package Description org.biojava.bio.structure.io.mmcif Input and Output of mmcif filesorg.biojava.bio.structure.io.mmcif.chem -
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Uses of ChemComp in org.biojava.bio.structure.io.mmcif
Methods in org.biojava.bio.structure.io.mmcif that return ChemComp Modifier and Type Method Description ChemComp
ChemicalComponentDictionary. getParent(ChemComp c)
Get the parent of a component.ChemComp
ChemicalComponentDictionary. getReplaced(java.lang.String id)
ChemComp
ChemicalComponentDictionary. getReplaced(ChemComp c)
if ChemComp is replacing another one, get the old version otherwise return the same ChemComp again.ChemComp
ChemicalComponentDictionary. getReplacer(java.lang.String id)
ChemComp
ChemicalComponentDictionary. getReplacer(ChemComp c)
if ChemComp is replaced by another one, get the newer version otherwise return the same ChemComp again.Methods in org.biojava.bio.structure.io.mmcif with parameters of type ChemComp Modifier and Type Method Description void
ChemicalComponentDictionary. addChemComp(ChemComp comp)
add a new component to the dictionaryChemComp
ChemicalComponentDictionary. getParent(ChemComp c)
Get the parent of a component.ChemComp
ChemicalComponentDictionary. getReplaced(ChemComp c)
if ChemComp is replacing another one, get the old version otherwise return the same ChemComp again.ChemComp
ChemicalComponentDictionary. getReplacer(ChemComp c)
if ChemComp is replaced by another one, get the newer version otherwise return the same ChemComp again.boolean
ChemicalComponentDictionary. isReplaced(ChemComp c)
boolean
ChemicalComponentDictionary. isReplacer(ChemComp c)
void
ChemCompConsumer. newChemComp(ChemComp c)
void
MMcifConsumer. newChemComp(ChemComp c)
void
SimpleMMcifConsumer. newChemComp(ChemComp c)
void
SimpleMMcifParser. triggerNewChemComp(ChemComp cc)
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Uses of ChemComp in org.biojava.bio.structure.io.mmcif.chem
Methods in org.biojava.bio.structure.io.mmcif.chem with parameters of type ChemComp Modifier and Type Method Description static java.lang.Character
ChemCompTools. getOneLetterCode(ChemComp cc, ChemicalComponentDictionary dictionary)
static boolean
ChemCompTools. isStandardChemComp(ChemComp cc)
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