Package org.biojava.bio.seq.io
Class ParseException
- java.lang.Object
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- java.lang.Throwable
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- java.lang.Exception
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- org.biojava.bio.BioException
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- org.biojava.bio.seq.io.ParseException
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- All Implemented Interfaces:
java.io.Serializable
public class ParseException extends BioException
ParseException should be thrown to indicate that there was a problem with parsing sequence information.- Author:
- Matthew Pocock
- See Also:
- Serialized Form
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Constructor Summary
Constructors Constructor Description ParseException()
ParseException(java.lang.String message)
ParseException(java.lang.Throwable nested)
ParseException(java.lang.Throwable nested, java.lang.String message)
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Method Summary
All Methods Static Methods Concrete Methods Modifier and Type Method Description static java.lang.String
newMessage(java.lang.Class format, java.lang.String accession, java.lang.String identifier, java.lang.String comments, java.lang.String parseBlock)
Make a new error message.
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Method Detail
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newMessage
public static java.lang.String newMessage(java.lang.Class format, java.lang.String accession, java.lang.String identifier, java.lang.String comments, java.lang.String parseBlock)
Make a new error message.- Parameters:
format
- the format object that was doing the parsingaccession
- the accession number of the record that failedidentifier
- the identifier of the sequence that failed (eg the GI number for genbank)comments
- any additional informationparseBlock
- the chunk of the file the parser was trying to parse when the error occured- Returns:
- the formatted error message
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